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VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing
- Authors
- Kim, Kijin; Park, Kyungmin; Lee, Seonghyeon; Baek, Seung-Hwan; Lim, Tae-Hun; Kim, Jongwoo; Manavalan, Balachandran; Song, Jin-Won; Kim, Won-Keun
- Issue Date
- May-2023
- Publisher
- Oxford University Press
- Citation
- Bioinformatics, v.39, no.5
- Indexed
- SCIE
SCOPUS
- Journal Title
- Bioinformatics
- Volume
- 39
- Number
- 5
- ISSN
- 1367-4803
1367-4811
- Abstract
- Detection and analysis of viral genomes with Nanopore sequencing has shown great promise in the surveillance of pathogen outbreaks. However, the number of virus detection pipelines supporting Nanopore sequencing is very limited. Here, we present VirPipe, a new pipeline for the detection of viral genomes from Nanopore or Illumina sequencing input featuring streamlined installation and customization.
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Collections - 1. Basic Science > Department of Microbiology > 1. Journal Articles
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Related Researcher
- Song, Jin Won
- College of Medicine (Department of Microbiology)